• New York Consortium for Interdisciplinary Training in Kidney, Urological & Hematological Research
Search
Close this search box.

publications

Publications

Awards/Honors

Dr. Sanjana Pillay (Post-doctoral fellow, Mount Sinai)

Congratulations on the K99/R00 award from NIH/NIDDK to elucidate the role of higher-order chromatin organization during erythropoiesis!

NYCKUHR_Bronstein - Trainee

Dr. Robert Bronstein (Post-doctoral fellow, Stony Brook)

Huge congratulations on receiving the 2025 KidneyCure TIG (Transition to Independence Grant) — well deserved. You are an inspiring future leader in the KUH field.

Dr. Samaneh DiMartino (Post-doctoral fellow, Stony Brook)

Congratulations on the NIH/NIDDK F32 award to explore BCAA catabolism in AKI and fibrosis! A tremendous achievement—so proud of you, Sama!

Jeffrey Arace

Dr. Jeffrey Arace (Post-doctoral fellow, Columbia)

So thrilled to congratulate Dr. Jeffrey Arace and his mentors, Drs. Brasch and Kuryluk, on Jeffrey’s winning first place at the New York Society of Nephrology Fellows Night!

John Hobbs (Pre-doctoral Student, Einstein)

Huge congratulations, John, on defending your doctoral thesis! You’re our first NYC Train KUHR predoctoral student to earn a PhD, with more to come in the year ahead.

Hanna Scholze

Hanna Scholze (Pre-doctoral student, Einstein)

Huge congratulations on the F30 award from NIH/NIDDK for deciphering the impact of early-life immune stimulation on shaping long-term hematopoiesis!

Jonathan Haydak (Post-doctoral fellow, Mount Sinai)

Congratulations on receiving the NYC Partnership Pilot Projects 2026 grant to support community screening and education for Cardiovascular–Kidney–Metabolic (CKM) syndrome!

Jaya Isaac (Postdoctoral fellow, Einstein)

Congratulations on being awarded an NIH Loan Repayment Program (LRP) award!

NYC Train KUHR 2025-2026 publications

Cwiek A, Dailey RK, Kameshwar AKS, Suzuki M, Isaac J, deRonde K, Conaway M, Bennett KM, Baldelomar EJ, Li T, Wu T, Hoch MR, Chavkin NW, Walker PD, Hirschi KK, Reidy KJ, Charlton JR

Preterm birth increases susceptibility to hyperglycemia induced glomerular alterations in male mice.
Sci Rep. 2025 May 29;15(1):18934. PMID: 40442182; PMCID: PMC12122990.

DiMartino S, Revelo MP, Mallipattu SK, Piret SE.

Activation of branched chain amino acid catabolism protects against nephrotoxic acute kidney injury.
Am J Physiol Renal Physiol. 2025 Jan 1;328(1):F152-F163. PMID: 39653371; PMCID: PMC11918290.

Piret SE, DiMartino S, Hanubal M, Davis M, Wang J, Bahadur T, Rath A, Gujarati NA, Frimpong BO, Bronstein R, Revelo MP, Guo Y, Mallipattu SK.

Krüppel-Like Factor 6 Induces RNA Polymerase II Subunit RPB1 to Promote Kidney Injury.
J Am Soc Nephrol. 2025 Oct 1;36(10):1914-1927. PMID: 40327838; PMCID: PMC12499623.

Delinois LJ, DiMartino S, Piret SE.

The physiology and pathophysiology of branched-chain amino acids in the kidney.
Nephron. 2026 Mar 5:1-15. PMID: 41785211.

He X, Rodriguez Balletas E, Zeng L, Zhang T, McEvoy CM, Misra PS, Yang W, Ki V, Wong JS, Mellambro K, Ray J, et al

Podocyte YAP/TAZ Hyperactivation is a driver of glomerular epithelial proliferative diseases in mice and humans.
Sci.Transl. Med. April 2025.

Ekperikpe US, Zhao S, Daehn IS.

Gene modification: Exploring the potential in treating kidney diseases.
Pharmacol Res. 2026 Feb;224:108104. PMID: 41554351.

Yu L, Ekperikpe US, Korsmo HW, Zhao S, Yi Z, Haydak J, Lefferts S, Meliambro K, Campbell KN, Azeloglu EU, Kohan DE, McCown PJ, Naik AS, Otto EA, Haraldsson B, Zhang W, Daehn IS.

Podocyte-derived endothelin-1 and endothelial cell endothelin A receptors are essential for glomerular injury in mouse models of focal segmental glomerulosclerosis.
Kidney Int. 2026 Feb 9. PMID: 41672248.

Mandal S, Brown AK, Ekperikpe US, Bhopatkar AA, Hughes KM, Johnson TD, Cooper JS, Wilbert KT, Cornelius DC, Williams JM.

mTOR blockade prevents progressive proteinuria but induces hyperglycaemia in obese Dahl salt-sensitive rats before puberty.
Exp Physiol. 2025 Oct 27. PMID: 41146401.

Beenken A, Shen TH, Ghotra A, Erdjument-Bromage H, Lee J, Kushner JS, Sturley RE, Khan A, Arace JR, Kronenberg L, Shen LD, Rahmani GH, Donahoe PK, Neubert TA, High FA, Weisz OA, Barasch J.

Failure of endocytic flux in Donnai-Barrow Syndrome caused by LRP2 p.C1400R.
JCI Insight. 2026 Apr 23:e199341. PMID: 42024452.

Iyer SG, Deng R, Jurcic JG, Varabyeva A, May BL, Fernando S, Lipsky A, Lamanna N, Rosenblat TL, Kasbekar M, Viny AD.

Treatment-emergent coagulopathy during azacitidine/venetoclax induction in AML.
Blood Neoplasia. 2026 Feb 21;3(2):100210. PMID: 41938746; PMCID: PMC13050052.

Qiu A, Viltard M, Deng R, Stauber J, Ghotra A, Werth M, Hinze C, Beenken A, Shen TH, Khan A, Xu K, Levitman A, Yu Y, Paragas N, Yaeh A, Desanti de Oliveira B, Boles RW, Bruck E, Corbin K, McNierney K, Dionne LK, Rosenberger C, Schmidt-Ott K, Carroll T, Mahjoub MR, Sampogna R, Barasch J.

A Switch in Iron Delivery Is Critical for Postnatal Kidney Development.
Kidney360. 2026 Feb 17. PMID: 41701548.

Rajagopal M, Kauffman J, Nadkarni GN.

Geometric Deep Learning for Multimodal Data in CKD.
J Am Soc Nephrol. 2025 Jun 3;36(9):1864-1866. PMID: 40459949; PMCID: PMC12416936.

Rajagopal M, Chan L, Nadkarni GN.

sing Predictive Models and AI for AKI Research.
Semin Nephrol. 2026 Jan;46(1):151673. PMID: 41068025.

Rajagopal M, Jayaraman P, Chan L.

Smart Learning: Artificial Intelligence in Kidney Disease Education.
Clin J Am Soc Nephrol. 2026 Mar 26. PMID: 41885935.

NYC Train KUHR 2024-2025 publications

Itoku, A., Isaac, J., Wilson, S., Reidy, K. & Kaskel, F.

APOL1 Nephropathy Risk Variants Through the Life Course: A Review.
Am J Kidney Dis. 2024;84:102-110. doi:10.1053/j.ajkd.2023.12.014

Oh, W. et al.

A novel method leveraging time series data to improve subphenotyping and application in critically ill patients with COVID-19.
Artif Intell Med. 2024;148:102750. doi:10.1016/j.artmed.2023.102750

Takkavatakarn, K., Oh, W., Cheng, E., Nadkarni, G. N. & Chan, L.

Machine learning models to predict end-stage kidney disease in chronic kidney disease stage 4.
BMC Nephrol. 2023;24:376. doi:10.1186/s12882-023-03424-7

Kilduff S, Steinman B, Hayde N.

Changes in graft outcomes in recipients <10 kg over 25 years of pediatric kidney transplantation in the United States.
Pediatr Transplant. 2024 Feb;28(1):e14679. doi: 10.1111/petr.14679. Epub 2023 Dec 27. PMID: 38149338; PMCID: PMC10872313.

Mazo, A. et al.

Mycophenolate Mofetil Versus Prednisone for Induction Therapy in Steroid-Sensitive Idiopathic Nephrotic Syndrome in Children: An Observational Study.
Kidney Med. 2024;6:100776. doi:10.1016/j.xkme.2023.100776

de Cos, M. et al.

Urinary Plasminogen as a Marker of Disease Progression in Human Glomerular Disease.
Am J Kidney Dis. 2024;84:205-214.e201. doi:10.1053/j.ajkd.2024.01.520

NYC Train KUHR 2023-2024 publications

Fallon TK, Zuvin M, Stern AD, Anandakrishnan N, Daehn IS, Azeloglu EU.

Open-Source System for Real-Time Functional Assessment of In Vitro Filtration Barriers.
Ann Biomed Eng. 2024 Feb;52(2):327-341. doi: 10.1007/s10439-023-03378-9. Epub 2023 Oct 29. PMID: 37899379; PMCID: PMC10808466.

Kilduff S, Steinman B, Hayde N.

Changes in graft outcomes in recipients <10 kg over 25 years of pediatric kidney transplantation in the United States.
Pediatr Transplant. 2024 Feb;28(1):e14679. doi: 10.1111/petr.14679. Epub 2023 Dec 27. PMID: 38149338; PMCID: PMC10872313.

Collins A, Swann JW, Proven MA, Patel CM, Mitchell CA, Kasbekar M, Dellorusso PV, Passegué E.

Maternal inflammation regulates fetal emergency myelopoiesis.
Cell. 2024 Mar 14;187(6):1402-1421.e21. doi: 10.1016/j.cell.2024.02.002. Epub 2024 Feb 29. PMID: 38428422; PMCID: PMC10954379.

Oh W, Jayaraman P, Tandon P, Chaddha US, Kovatch P, Charney AW, Glicksberg BS, Nadkarni GN.

A novel method leveraging time series data to improve subphenotyping and application in critically ill patients with COVID-19.
Artif Intell Med. 2024 Feb;148:102750. doi: 10.1016/j.artmed.2023.102750. Epub 2023 Dec 20. PMID: 38325922; PMCID: PMC10864255.

Kilduff, S., Hayde, N., Viswanathan, S., Reidy, K. & Abramowitz, M. K.

Metabolic acidosis in pediatric kidney transplant recipients.
Pediatr Nephrol. 2023;38:4165-4173. doi:10.1007/s00467-023-06072-z

Oh W, Nadkarni GN.

Federated Learning in Health care Using Structured Medical Data.
Adv Kidney Dis Health. 2023 Jan;30(1):4-16. doi: 10.1053/j.akdh.2022.11.007. PMID: 36723280; PMCID: PMC10208416.

Abbott EE, Oh W, Dai Y, Feuer C, Chan L, Carr BG, Nadkarni GN.

Joint Modeling of Social Determinants and Clinical Factors to Define Subphenotypes in Out-of-Hospital Cardiac Arrest Survival: Cluster Analysis.
JMIR Aging. 2023 Dec 6;6:e51844. doi: 10.2196/51844. PMID: 38059569; PMCID: PMC10721134.

Kittrell HD, DiMenna FJ, Arad AD, Oh W, Hofer I, Walker RW, Loos RJF, Albu JB, Nadkarni GN.

Discrepancy between predicted and measured exercise intensity for eliciting the maximal rate of lipid oxidation.
Nutr Metab Cardiovasc Dis. 2023 Nov;33(11):2189-2198. doi: 10.1016/j.numecd.2023.07.014. Epub 2023 Jul 15. PMID: 37567789.

Cumpelik A, Cody E, Yu SM, Grasset EK, Dominguez-Sola D, Cerutti A, Heeger PS.

Cutting Edge: Neutrophil Complement Receptor Signaling Is Required for BAFF-Dependent Humoral Responses in Mice.
J Immunol. 2023 Jan 1;210(1):19-23. doi: 10.4049/jimmunol.2200410. PMID: 36454023; PMCID: PMC9780177.

Bronstein R, Pace J, Gowthaman Y, Salant DJ, Mallipattu SK.

Podocyte-Parietal Epithelial Cell Interdependence in Glomerular Development and Disease.
J Am Soc Nephrol. 2023 May 1;34(5):737-750. doi: 10.1681/ASN.0000000000000104. Epub 2023 Feb 16. PMID: 36800545; PMCID: PMC10125654.

Vasquez-Rios G, Oh W, Lee S, Bhatraju P, Mansour SG, Moledina DG, Gulamali FF, Siew ED, Garg AX, Sarder P, Chinchilli VM, Kaufman JS, Hsu CY, Liu KD, Kimmel PL, Go AS, Wurfel MM, Himmelfarb J, Parikh CR, Coca SG, Nadkarni GN.

Joint Modeling of Clinical and Biomarker Data in Acute Kidney Injury Defines Unique Subphenotypes with Differing Outcomes.
Clin J Am Soc Nephrol. 2023 Jun 1;18(6):716-726. doi: 10.2215/CJN.0000000000000156. Epub 2023 Mar 28. PMID: 36975209; PMCID: PMC10278836.

Jiang J, Chan L, Kauffman J, Narula J, Charney AW, Oh W, Nadkarni G; N3C Consortium.

Impact of Vaccination on Major Adverse Cardiovascular Events in Patients With COVID-19 Infection.
J Am Coll Cardiol. 2023 Jan 27;81(9):928–30. doi: 10.1016/j.jacc.2022.12.006. Epub ahead of print. PMID: 36813689; PMCID: PMC9939951.

Deoliveira M, Sikri H, Yu SM, He JC.

Viral Glomerulopathy.
Glomerular Dis. 2023 Aug 8;3(1):148-154. doi: 10.1159/000531434. PMID: 37901695; PMCID: PMC10601964.

Kilduff S, Hayde N, Viswanathan S, Reidy K, Abramowitz MK.

Metabolic acidosis in pediatric kidney transplant recipients.
KPediatr Nephrol. 2023 PMID: 37422606.

Mazo A, Kilduff S, Pereira T, Solomon S, Matloff R, Zolotnitskaya A, Samsonov D.

Mycophenolate Mofetil Versus Prednisone for Induction Therapy in Steroid- Sensitive Idiopathic Nephrotic Syndrome in Children: An Observational Study.
Kidney Med. 2023 Dec 10;6(3):100776.PMCID: PMC10904994.

Kasbekar*, Mitchell*, Proven*, Passegue.

Hematopoietic stem cells through the ages: A lifetime of adaptation to organismal demands.
Cell Stem Cell. 2023. (Review) PMCID: PMC10842631*Contributed equally to this work.

Wan Y, Mu Q, Krzysztoń R, Cohen J, Coraci D, Helenek C, Tompkins C, Lin A, Farquhar K, Cross E, Wang J, Balázsi G.

Adaptive DNA amplification of synthetic gene circuit opens a way to overcome cancer chemoresistance.
Proc Natl Acad Sci U S A. 2023 Dec 5;120(49):e2303114120. doi: 10.1073/pnas.2303114120. Epub 2023 Nov 29. PMID: 38019857; PMCID: PMC10710087.

Chen X, Pillay S, Lohmann F, Bieker JJ.

Association of DDX5/p68 protein with the upstream erythroid enhancer element (EHS1) of the gene encoding the KLF1 transcription factor.
J Biol Chem. 2023 Dec;299(12):105489. doi: 10.1016/j.jbc.2023.105489. Epub 2023 Nov 22. PMID: 38000658; PMCID: PMC10750184.

Meah A, Vedarethinam V, Bronstein R, Gujarati N, Jain T, Mallipattu SK, Li Y, Wang J.

Single-Cell Spatial MIST for Versatile, Scalable Detection of Protein Markers.
Biosensors (Basel). 2023 Aug 27;13(9):852. doi: 10.3390/bios13090852. PMID: 37754086; PMCID: PMC10526469.

Rona, G., Miwatani-Minter, B., Zhang, Q., Goldberg, H.V., Kerzhnerman, M.A., Howard, J.B., Simoneschi, D., Lane, E., Hobbs, J.W., Sassani, E. and Wang, A.A. & Pagano, M, 2024.

CDK-independent role of D-type cyclins in regulating DNA mismatch repair.
Molecular Cell. doi.org/10.1016/j. molcel. 2024.02.010.

Reidy K, Isaac J, Charlton J.

Development of Renal Function.
Rudolph's Pediatrics, 24e. McGraw Hill (In Press).

Takkavatakarn K, Oh W, Cheng E, Nadkarni GN, Chan L.

Machine learning models to predict end-stage kidney disease in chronic kidney disease stage 4.
BMC Nephrol. 2023 Dec 19;24(1):376. doi: 10.1186/s12882-023-03424-7. PMID: 38114923; PMCID: PMC10731874.

Kilduff S, Steinman B, Xie Y, Kiss-Farengo T, Foca M, Hayde N.

Pet safety guidelines for pediatric transplant recipients.
Pediatr Transplant. 2024 Feb;28(1):e14527. doi: 10.1111/petr.14527. Epub 2023 Aug 7. PMID: 37550270.

Deoliveira M, Sikri H, Yu SM, He JC.

Viral Glomerulopathy
Glomerular Dis. 2023 Aug 8;3(1):148-154. doi: 10.1159/000531434. PMID: 37901695; PMCID: PMC10601964.

asquez-Rios G, Oh W, Lee S, Bhatraju P, Mansour SG, Moledina DG, Gulamali FF, Siew ED, Garg AX, Sarder P, Chinchilli VM.

Joint Modeling of Clinical and Biomarker Data in Acute Kidney Injury Defines Unique Subphenotypes with Differing Outcomes: The ASSESS-AKI Study.
JClinical Journal of the American Society of Nephrology: CJASN. 2023 Mar 28.

Oh W, Jayaraman P, Sawant AS, Chan L, Levin MA, Charney AW, Kovatch P, Glicksberg BS, Nadkarni GN

Using sequence clustering to identify clinically relevant subphenotypes in patients with COVID-19 admitted to the intensive care unit.
Journal of the American Medical Informatics Association. 2022 Mar;29(3):489-99.

Fu J, Sun Z, Wang X, Yu SM, Zhang W, Lee K, He, JC.

The single-cell landscape of kidney immune cells reveals transcriptional heterogeneity in early diabetic kidney disease.
Kidney Int. 2022 Sep 13;S0085-2538(22)00715-3. doi: 10.1016/j.kint.2022.08.026. PMID: 36108806

Samuel M. Yu, John Cijiang He.

Aged glomeruli: a link between PD-1 and podocytes.
J Clin Invest. 2022 Aug 15;132(16):e162330. PMID: 35968780

links

team

PRECEPTOrS

calendar

publications

trainees

RESOURCES

grants

EDUCATIONAL RESOURCES

Keep in touch

© All rights reserved – 2023 NYCKUHR
webtrova

Designed by Webtrova