NYC Train KUHR 2023-2024 publications

Oh W, Nadkarni GN.

Federated Learning in Health care Using Structured Medical Data.
Adv Kidney Dis Health. 2023 Jan;30(1):4-16. doi: 10.1053/j.akdh.2022.11.007. PMID: 36723280; PMCID: PMC10208416.

Abbott EE, Oh W, Dai Y, Feuer C, Chan L, Carr BG, Nadkarni GN.

Joint Modeling of Social Determinants and Clinical Factors to Define Subphenotypes in Out-of-Hospital Cardiac Arrest Survival: Cluster Analysis.
JMIR Aging. 2023 Dec 6;6:e51844. doi: 10.2196/51844. PMID: 38059569; PMCID: PMC10721134.

Kittrell HD, DiMenna FJ, Arad AD, Oh W, Hofer I, Walker RW, Loos RJF, Albu JB, Nadkarni GN.

Discrepancy between predicted and measured exercise intensity for eliciting the maximal rate of lipid oxidation.
Nutr Metab Cardiovasc Dis. 2023 Nov;33(11):2189-2198. doi: 10.1016/j.numecd.2023.07.014. Epub 2023 Jul 15. PMID: 37567789.

Cumpelik A, Cody E, Yu SM, Grasset EK, Dominguez-Sola D, Cerutti A, Heeger PS.

Cutting Edge: Neutrophil Complement Receptor Signaling Is Required for BAFF-Dependent Humoral Responses in Mice.
J Immunol. 2023 Jan 1;210(1):19-23. doi: 10.4049/jimmunol.2200410. PMID: 36454023; PMCID: PMC9780177.

Bronstein R, Pace J, Gowthaman Y, Salant DJ, Mallipattu SK.

Podocyte-Parietal Epithelial Cell Interdependence in Glomerular Development and Disease.
J Am Soc Nephrol. 2023 May 1;34(5):737-750. doi: 10.1681/ASN.0000000000000104. Epub 2023 Feb 16. PMID: 36800545; PMCID: PMC10125654.

Vasquez-Rios G, Oh W, Lee S, Bhatraju P, Mansour SG, Moledina DG, Gulamali FF, Siew ED, Garg AX, Sarder P, Chinchilli VM, Kaufman JS, Hsu CY, Liu KD, Kimmel PL, Go AS, Wurfel MM, Himmelfarb J, Parikh CR, Coca SG, Nadkarni GN.

Joint Modeling of Clinical and Biomarker Data in Acute Kidney Injury Defines Unique Subphenotypes with Differing Outcomes.
Clin J Am Soc Nephrol. 2023 Jun 1;18(6):716-726. doi: 10.2215/CJN.0000000000000156. Epub 2023 Mar 28. PMID: 36975209; PMCID: PMC10278836.

Jiang J, Chan L, Kauffman J, Narula J, Charney AW, Oh W, Nadkarni G; N3C Consortium.

Impact of Vaccination on Major Adverse Cardiovascular Events in Patients With COVID-19 Infection.
J Am Coll Cardiol. 2023 Jan 27;81(9):928–30. doi: 10.1016/j.jacc.2022.12.006. Epub ahead of print. PMID: 36813689; PMCID: PMC9939951.

Deoliveira M, Sikri H, Yu SM, He JC.

Viral Glomerulopathy.
Glomerular Dis. 2023 Aug 8;3(1):148-154. doi: 10.1159/000531434. PMID: 37901695; PMCID: PMC10601964.

Kilduff S, Hayde N, Viswanathan S, Reidy K, Abramowitz MK.

Metabolic acidosis in pediatric kidney transplant recipients.
KPediatr Nephrol. 2023 PMID: 37422606.

Mazo A, Kilduff S, Pereira T, Solomon S, Matloff R, Zolotnitskaya A, Samsonov D.

Mycophenolate Mofetil Versus Prednisone for Induction Therapy in Steroid- Sensitive Idiopathic Nephrotic Syndrome in Children: An Observational Study.
Kidney Med. 2023 Dec 10;6(3):100776.PMCID: PMC10904994.

Kasbekar*, Mitchell*, Proven*, Passegue.

Hematopoietic stem cells through the ages: A lifetime of adaptation to organismal demands.
Cell Stem Cell. 2023. (Review) PMCID: PMC10842631*Contributed equally to this work.

Wan Y, Mu Q, Krzysztoń R, Cohen J, Coraci D, Helenek C, Tompkins C, Lin A, Farquhar K, Cross E, Wang J, Balázsi G.

Adaptive DNA amplification of synthetic gene circuit opens a way to overcome cancer chemoresistance.
Proc Natl Acad Sci U S A. 2023 Dec 5;120(49):e2303114120. doi: 10.1073/pnas.2303114120. Epub 2023 Nov 29. PMID: 38019857; PMCID: PMC10710087.

Chen X, Pillay S, Lohmann F, Bieker JJ.

Association of DDX5/p68 protein with the upstream erythroid enhancer element (EHS1) of the gene encoding the KLF1 transcription factor.
J Biol Chem. 2023 Dec;299(12):105489. doi: 10.1016/j.jbc.2023.105489. Epub 2023 Nov 22. PMID: 38000658; PMCID: PMC10750184.

Meah A, Vedarethinam V, Bronstein R, Gujarati N, Jain T, Mallipattu SK, Li Y, Wang J.

Single-Cell Spatial MIST for Versatile, Scalable Detection of Protein Markers.
Biosensors (Basel). 2023 Aug 27;13(9):852. doi: 10.3390/bios13090852. PMID: 37754086; PMCID: PMC10526469.

Fallon TK, Zuvin M, Stern AD, Anandakrishnan N, Daehn IS, Azeloglu EU.

Open-Source System for Real-Time Functional Assessment of In Vitro Filtration Barriers.
Ann Biomed Eng. 2024 Feb;52(2):327-341. doi: 10.1007/s10439-023-03378-9. Epub 2023 Oct 29. PMID: 37899379; PMCID: PMC10808466.

Collins A, Swann JW, Proven MA, Patel CM, Mitchell CA, Kasbekar M, Dellorusso PV, Passegué E.

Maternal inflammation regulates fetal emergency myelopoiesis.
Cell. 2024 Mar 14;187(6):1402-1421.e21. doi: 10.1016/j.cell.2024.02.002. Epub 2024 Feb 29. PMID: 38428422; PMCID: PMC10954379.

Rona, G., Miwatani-Minter, B., Zhang, Q., Goldberg, H.V., Kerzhnerman, M.A., Howard, J.B., Simoneschi, D., Lane, E., Hobbs, J.W., Sassani, E. and Wang, A.A. & Pagano, M, 2024.

CDK-independent role of D-type cyclins in regulating DNA mismatch repair.
Molecular Cell. molcel. 2024.02.010.

Reidy K, Isaac J, Charlton J.

Development of Renal Function.
Rudolph's Pediatrics, 24e. McGraw Hill (In Press).

Itoku A, Isaac J, Wilson S, Reidy K, Kaskel F.

APOL1 Nephropathy Risk Variants Through the Life Course: A Review.
Am J Kidney Dis. 2024 Feb 9:S0272-6386(24)00597-3. doi: 10.1053/j.ajkd.2023.12.014. Epub ahead of print. PMID: 38341125.

Oh W, Jayaraman P, Tandon P, Chaddha US, Kovatch P, Charney AW, Glicksberg BS, Nadkarni GN.

A novel method leveraging time series data to improve subphenotyping and application in critically ill patients with COVID-19.
Artif Intell Med. 2024 Feb;148:102750. doi: 10.1016/j.artmed.2023.102750. Epub 2023 Dec 20. PMID: 38325922; PMCID: PMC10864255.

Takkavatakarn K, Oh W, Cheng E, Nadkarni GN, Chan L.

Machine learning models to predict end-stage kidney disease in chronic kidney disease stage 4.
BMC Nephrol. 2023 Dec 19;24(1):376. doi: 10.1186/s12882-023-03424-7. PMID: 38114923; PMCID: PMC10731874.

Kilduff S, Steinman B, Xie Y, Kiss-Farengo T, Foca M, Hayde N.

Pet safety guidelines for pediatric transplant recipients.
Pediatr Transplant. 2024 Feb;28(1):e14527. doi: 10.1111/petr.14527. Epub 2023 Aug 7. PMID: 37550270.

Kilduff S, Steinman B, Hayde N.

Changes in graft outcomes in recipients <10 kg over 25 years of pediatric kidney transplantation in the United States.
Pediatr Transplant. 2024 Feb;28(1):e14679. doi: 10.1111/petr.14679. Epub 2023 Dec 27. PMID: 38149338; PMCID: PMC10872313.

Deoliveira M, Sikri H, Yu SM, He JC.

Viral Glomerulopathy
Glomerular Dis. 2023 Aug 8;3(1):148-154. doi: 10.1159/000531434. PMID: 37901695; PMCID: PMC10601964.

asquez-Rios G, Oh W, Lee S, Bhatraju P, Mansour SG, Moledina DG, Gulamali FF, Siew ED, Garg AX, Sarder P, Chinchilli VM.

Joint Modeling of Clinical and Biomarker Data in Acute Kidney Injury Defines Unique Subphenotypes with Differing Outcomes: The ASSESS-AKI Study.
JClinical Journal of the American Society of Nephrology: CJASN. 2023 Mar 28.

Oh W, Jayaraman P, Sawant AS, Chan L, Levin MA, Charney AW, Kovatch P, Glicksberg BS, Nadkarni GN

Using sequence clustering to identify clinically relevant subphenotypes in patients with COVID-19 admitted to the intensive care unit.
Journal of the American Medical Informatics Association. 2022 Mar;29(3):489-99.

Fu J, Sun Z, Wang X, Yu SM, Zhang W, Lee K, He, JC.

The single-cell landscape of kidney immune cells reveals transcriptional heterogeneity in early diabetic kidney disease.
Kidney Int. 2022 Sep 13;S0085-2538(22)00715-3. doi: 10.1016/j.kint.2022.08.026. PMID: 36108806

Samuel M. Yu, John Cijiang He.

Aged glomeruli: a link between PD-1 and podocytes.
J Clin Invest. 2022 Aug 15;132(16):e162330. PMID: 35968780